First select the Mysql version you want to install from WHM > Tweak Settings

Then login via shell and issue below command :

/scripts/mysqlup --force

Once the install is complete , check mysql version and then compile php/apache to make it load new libraries by using below :

/scripts/easyapache

(Select modules and other settings according to your choice from easyapache menu)

Once its complete you are done !

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